STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sll1164Uncharacterized transporter sll1164; ORF_ID:sll1164; unknown protein. (349 aa)    
Predicted Functional Partners:
sll1162
ORF_ID:sll1162; unknown protein.
 
     0.817
sll1163
ORF_ID:sll1163; unknown protein.
  
  
 0.788
slr0311
Sensory transduction histidine kinase; ORF_ID:slr0311.
 
    0.613
sll0888
ORF_ID:sll0888; unknown protein.
  
     0.606
slr1449
ORF_ID:slr1449; unknown protein.
  
     0.573
desB
Delta 15 desaturase; ORF_ID:sll1441.
  
     0.558
sll1161
Adenylate cyclase; ORF_ID:sll1161.
       0.541
sll1200
ORF_ID:sll1200; unknown protein.
 
     0.535
sll1250
ORF_ID:sll1250; hypothetical protein.
  
     0.528
dnaX
DNA polymerase III subunit; ORF_ID:sll1360; gene:dnaX or dnaZ.
 
     0.490
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.