STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fabG-23-ketoacyl-acyl carrier protein reductase; Catalyzes the reduction of acetoacetyl-CoA to (R)-3- hydroxybutyryl-CoA. When expressed in E.coli with Synechocystis PhaA, PhaC and PhaE confers the ability to synthesize up to 12% (w/w) poly(3-hydroxybutyrate) (PHB) depending on the carbon source ; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (240 aa)    
Predicted Functional Partners:
thl
Acetyl coenzyme A acetyltransferase (thiolase); When expressed in E.coli with Synechocystis PhaB, PhaC and PhaE confers the ability to synthesize up to 12% (w/w) poly(3- hydroxybutyrate) (PHB) depending on the carbon source.
 0.999
phbC
Poly(3-hydroxyalkanoate) synthase; When expressed in E.coli with Synechocystis PhaE and C.necator PhaA and PhaB, confers the ability to synthesize up to 13% (w/w) poly(3-hydroxybutyrate) (PHB) depending on the carbon source; all 4 genes are necessary for PHB production. Cell-free in vitro coexpression with PhaE gives a heterodimer able to polymerize 3- hydroxybutyrate-CoA ; Belongs to the PHA/PHB synthase family. Type III PhaC subfamily.
 
 
 0.998
slr1829
Poly(3-hydroxyalkanoate) polymerase subunit PhaE; When expressed in E.coli with Synechocystis PhaC and C.necator PhaA and PhaB, confers the ability to synthesize up to 13% (w/w) poly(3-hydroxybutyrate) (PHB) depending on the carbon source; all 4 genes are necessary for PHB production. Cell-free in vitro coexpression with PhaE gives a heterodimer able to polymerize 3- hydroxybutyrate-CoA. This subunit has no catalytic activity but enhances the activity of PhaC, the catalytic subunit (By similarity).
 
  
 0.997
fabD
Malonyl coenzyme A-acyl carrier protein transacylase; ORF_ID:slr2023; gene:fabD or tfpA; Belongs to the FabD family.
 
 0.851
fabF-2
Beta ketoacyl-acyl carrier protein synthase; ORF_ID:slr1332; gene:fabF or fabJ; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.848
fabF
Beta ketoacyl-acyl carrier protein synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.795
pta
Phosphotransacetylase; Involved in acetate metabolism; In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family.
  
  
 0.790
fabH
Beta-ketoacyl-acyl carrier protein synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.
  
 0.752
slr1192
Zinc-containing alcohol dehydrogenase family; ORF_ID:slr1192.
  
 
 0.713
sll0565
ORF_ID:sll0565; unknown protein.
      
 0.680
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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