STRINGSTRING
spsC protein (Synechocystis sp. PCC6803) - STRING interaction network
"spsC" - Spore coat polysaccharide biosynthesis protein in Synechocystis sp. PCC6803
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spsCSpore coat polysaccharide biosynthesis protein (345 aa)    
Predicted Functional Partners:
yefA
GDP-D-mannose dehydratase (320 aa)
       
  0.980
gmd
GDP-D-mannose dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose (362 aa)
       
  0.980
slr0583
Hypothetical protein (310 aa)
   
 
  0.979
fcl
Hypothetical protein; Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction (312 aa)
   
 
  0.979
sll1496
Mannose-1-phosphate guanyltransferase (843 aa)
   
 
  0.903
spsA
Spore coat polysaccharide biosynthesis protein (276 aa)
   
   
  0.901
slr0338
Hypothetical protein (364 aa)
 
 
  0.874
SYNGTS_1474
No annotation available (164 aa)
              0.859
slr2112
Transposase (119 aa)
              0.859
SYNGTS_1536
dTDP-glucose 4-6-dehydratase (309 aa)
 
 
  0.832
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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