STRINGSTRING
sll1879 protein (Synechocystis sp. PCC6803) - STRING interaction network
"sll1879" - Two-component response regulator Rre23 in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sll1879Two-component response regulator Rre23 (562 aa)    
Predicted Functional Partners:
SYNGTS_2057
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (345 aa)
       
      0.871
ssl0788
Hypothetical protein (97 aa)
   
          0.705
ssl1918
Hypothetical protein (97 aa)
   
          0.693
slr1799
Hypothetical protein (637 aa)
   
          0.692
sll1516
Hypothetical protein (624 aa)
   
          0.689
slr0731
Hypothetical protein (402 aa)
   
          0.688
ssl0787
Hypothetical protein (199 aa)
   
          0.662
slr0962
Hypothetical protein (477 aa)
   
          0.633
slr1949
Hypothetical protein (212 aa)
   
          0.631
slr0799
Transposase (107 aa)
           
  0.629
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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