STRINGSTRING
gspD protein (Synechocystis sp. PCC6803) - STRING interaction network
"gspD" - General secretion pathway protein D in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspDGeneral secretion pathway protein D (785 aa)    
Predicted Functional Partners:
slr1275
Hypothetical protein (284 aa)
 
   
  0.869
SYNGTS_2329
General secretion pathway protein E (672 aa)
 
   
  0.859
SYNGTS_2589
General secretion pathway protein E (813 aa)
 
   
  0.838
gspF
Pilin biogenesis protein (404 aa)
 
   
  0.823
SYNGTS_1869
Twitching mobility protein (428 aa)
 
   
  0.813
pilM
Membrane protein (367 aa)
 
   
  0.789
slr1276
Hypothetical protein (275 aa)
 
          0.772
SYNGTS_1993
Twitching motility protein (369 aa)
 
   
  0.749
slr0420
Hypothetical protein (227 aa)
   
          0.726
ssr2047
Hypothetical protein (87 aa)
   
          0.721
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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