STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sll0147ORF_ID:sll0147; unknown protein. (668 aa)    
Predicted Functional Partners:
crtO
B-carotene ketolase; ORF_ID:slr0088.
 
 
 0.985
crtQ
Zeta-carotene desaturase precursor; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7' (By similarity).
 
  
 0.976
sll0254
ORF_ID:sll0254; unknown protein.
 
  
 0.930
sll0033
ORF_ID:sll0033; unknown protein.
  
 
 0.927
sll0659
ORF_ID:sll0659; unknown protein.
  
  
 
0.920
bhy
B-carotene hydroxylase; ORF_ID:sll1468.
   
 
 0.902
pys
Phytoene synthase; Involved in the biosynthesis of carotenoids. Catalyzes the condensation of two molecules of geranylgeranyl diphosphate (GGPP) to give prephytoene diphosphate (PPPP) and the subsequent rearrangement of the cyclopropylcarbinyl intermediate to yield 15-cis-phytoene.
  
  
 0.854
sll0088
ORF_ID:sll0088; unknown protein.
      
 0.821
sll0148
ORF_ID:sll0148; unknown protein.
 
     0.807
slr1546
ORF_ID:slr1546; unknown protein.
  
    0.772
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.