STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabDSuccinate-semialdehyde dehydrogenase (NADP+); Catalyzes the NADP(+) dependent oxidation of succinate semialdehyde to succinate. (454 aa)    
Predicted Functional Partners:
sdhB-2
Succinate dehydrogenase iron-sulfur protein; ORF_ID:sll0823; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
 
 0.971
frdA
Succinate dehydrogenase flavoprotein subunit; ORF_ID:slr1233.
   
 0.952
sdhB
Succinate dehydrogenase iron-sulphur protein subunit; ORF_ID:sll1625; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
 
 0.943
gltA
Citrate synthase; ORF_ID:sll0401; gene:gltA or gluT.
  
 0.928
citH
2-ketoacid dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
 0.928
hdrB
Heterodisulfide reductase subunit B; ORF_ID:slr0201.
   
 
  0.901
slr0782
Amine oxidase; L-amino acid dehydrogenase with broad substrate specificity. Catalyzes the oxidative deamination of various L-amino acids, L-Arg and L-Cys being the best substrates in vitro. Likely functions mainly as an L-arginine dehydrogenase in vivo. Probably feeds electrons from L- arginine oxidation and also from the oxidation of other L-amino acids into the respiratory electron transport chain associated to the thylakoid membrane, and does not directly interact with molecular oxygen but donates electrons to the plastoquinone pool. Cannot use D- amino acids as substrates; Belongs [...]
    
 0.897
fumC
Fumarase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
 0.887
argD
N-acetylornithine aminotransferase; ORF_ID:slr1022; gene:argD or dtu; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
 
 
 0.863
icd
Isocitrate dehydrogenase (NADP+); ORF_ID:slr1289.
   
 0.842
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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