Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
nucH | sphS | gene:10497815 | gene:10499583 | Extracellular nuclease; ORF_ID:sll0656. | Regulation of the phosphate regulon; ORF_ID:sll0337. | 0.894 |
sll0039 | sll1905 | gene:10500293 | gene:10498754 | CheY subfamily; ORF_ID:sll0039. | Hybrid sensory kinase; ORF_ID:sll1905. | 0.906 |
sll0039 | slr1037 | gene:10500293 | gene:10498039 | CheY subfamily; ORF_ID:sll0039. | CheY subfamily; ORF_ID:slr1037. | 0.424 |
sll0039 | slr1759 | gene:10500293 | gene:10497917 | CheY subfamily; ORF_ID:sll0039. | Hybrid sensory kinase; ORF_ID:slr1759. | 0.917 |
sll0039 | sphS | gene:10500293 | gene:10499583 | CheY subfamily; ORF_ID:sll0039. | Regulation of the phosphate regulon; ORF_ID:sll0337. | 0.834 |
sll0649 | sll1905 | gene:10497826 | gene:10498754 | OmpR subfamily; ORF_ID:sll0649. | Hybrid sensory kinase; ORF_ID:sll1905. | 0.897 |
sll0649 | slr1759 | gene:10497826 | gene:10497917 | OmpR subfamily; ORF_ID:sll0649. | Hybrid sensory kinase; ORF_ID:slr1759. | 0.906 |
sll0649 | slr1909 | gene:10497826 | gene:10497991 | OmpR subfamily; ORF_ID:sll0649. | NarL subfamily; ORF_ID:slr1909. | 0.473 |
sll0649 | sphS | gene:10497826 | gene:10499583 | OmpR subfamily; ORF_ID:sll0649. | Regulation of the phosphate regulon; ORF_ID:sll0337. | 0.827 |
sll1905 | sll0039 | gene:10498754 | gene:10500293 | Hybrid sensory kinase; ORF_ID:sll1905. | CheY subfamily; ORF_ID:sll0039. | 0.906 |
sll1905 | sll0649 | gene:10498754 | gene:10497826 | Hybrid sensory kinase; ORF_ID:sll1905. | OmpR subfamily; ORF_ID:sll0649. | 0.897 |
sll1905 | slr0081 | gene:10498754 | gene:10500058 | Hybrid sensory kinase; ORF_ID:sll1905. | OmpR subfamily; ORF_ID:slr0081. | 0.902 |
sll1905 | slr0115 | gene:10498754 | gene:10500157 | Hybrid sensory kinase; ORF_ID:sll1905. | OmpR subfamily; ORF_ID:slr0115. | 0.901 |
sll1905 | slr1037 | gene:10498754 | gene:10498039 | Hybrid sensory kinase; ORF_ID:sll1905. | CheY subfamily; ORF_ID:slr1037. | 0.900 |
sll1905 | slr1042 | gene:10498754 | gene:10497887 | Hybrid sensory kinase; ORF_ID:sll1905. | CheY subfamily; ORF_ID:slr1042. | 0.908 |
sll1905 | slr1759 | gene:10498754 | gene:10497917 | Hybrid sensory kinase; ORF_ID:sll1905. | Hybrid sensory kinase; ORF_ID:slr1759. | 0.996 |
sll1905 | slr1909 | gene:10498754 | gene:10497991 | Hybrid sensory kinase; ORF_ID:sll1905. | NarL subfamily; ORF_ID:slr1909. | 0.909 |
sll1905 | sphS | gene:10498754 | gene:10499583 | Hybrid sensory kinase; ORF_ID:sll1905. | Regulation of the phosphate regulon; ORF_ID:sll0337. | 0.975 |
slr0081 | sll1905 | gene:10500058 | gene:10498754 | OmpR subfamily; ORF_ID:slr0081. | Hybrid sensory kinase; ORF_ID:sll1905. | 0.902 |
slr0081 | slr1759 | gene:10500058 | gene:10497917 | OmpR subfamily; ORF_ID:slr0081. | Hybrid sensory kinase; ORF_ID:slr1759. | 0.906 |
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