STRINGSTRING
ycf38 protein (Synechocystis sp. PCC6803) - STRING interaction network
"ycf38" - Conserved hypothetical protein Ycf38 in Synechocystis sp. PCC6803
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycf38Conserved hypothetical protein Ycf38 (294 aa)    
Predicted Functional Partners:
sll0759
ABC transporter (347 aa)
 
  0.980
sll0489
ABC transporter (342 aa)
 
  0.872
sll0778
ABC transporter (790 aa)
   
  0.858
sll0415
ABC transporter (354 aa)
   
  0.855
slr1113
ABC transporter (332 aa)
   
  0.855
sll1898
Hypothetical protein (332 aa)
       
    0.737
sll0761
Hypothetical protein (119 aa)
              0.600
slr1915
Hypothetical protein (104 aa)
   
          0.574
ndhO
Hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon- concentration (By similarity) (72 aa)
   
          0.555
sll0822
Hypothetical protein (129 aa)
   
          0.548
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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