STRINGSTRING
rnd protein (Synechocystis sp. PCC6803) - STRING interaction network
"rnd" - Ribonuclease D in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rndRibonuclease D (217 aa)    
Predicted Functional Partners:
sll1290
Ribonuclease II (666 aa)
   
  0.997
rne
Ribonuclease E (674 aa)
     
 
  0.977
ski2
Antiviral protein (1006 aa)
     
  0.971
zam
Protein conferring resistance to acetazolamide; Not known; control resistance to the carbonic anhydrase inhibitor acetazolamide (781 aa)
     
  0.959
pacS
Cation-transporting ATPase E1-E2 ATPase; May play a role in the osmotic adaptation (745 aa)
           
  0.852
slr1962
Hypothetical protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system (370 aa)
           
  0.828
sll0319
Hypothetical protein (297 aa)
         
  0.808
rnz
Hypothetical protein; Zinc phosphodiesterase, which displays some tRNA 3’- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3’-trailer from precursor tRNA (326 aa)
     
 
    0.795
slr1950
Cation-transporting ATPase E1-E2 ATPase (780 aa)
           
  0.777
slr1959
Hypothetical protein (827 aa)
   
  0.767
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
Server load: low (14%) [HD]