STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbcLRibulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. (470 aa)    
Predicted Functional Partners:
rbcS
Ribulose bisphosphate carboxylase small subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity); Belongs to the RuBisCO small chain family.
 
 0.999
ccmM
Carbon dioxide concentrating mechanism protein; ORF_ID:sll1031.
  
 
 0.998
rbcX
Unknown function; ORF_ID:slr0011.
   
 
 0.985
prk
Phosphoribulokinase; ORF_ID:sll1525; gene:prk or ptk.
 
  
 0.981
pgk
Phosphoglycerate kinase; ORF_ID:slr0394; Belongs to the phosphoglycerate kinase family.
    
 0.958
slr0458
ORF_ID:slr0458; unknown protein.
  
  
 0.915
cbbZp
Phosphoglycolate phosphatase; ORF_ID:sll1349.
     
 0.913
sll0102
ORF_ID:sll0102; unknown protein.
    
 
 0.906
slr1762
ORF_ID:slr1762; unknown protein.
     
 0.904
ccmN
CcmN protein; ORF_ID:sll1032; hypothetical protein.
    
 
 0.901
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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