Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
aspC | sll0005 | gene:10499703 | gene:10499704 | Aspartate aminotransferase; ORF_ID:sll0006; gene:aspC or aat. | ABC1-like; ORF_ID:sll0005; Belongs to the protein kinase superfamily. ADCK protein kinase family. | 0.523 |
aspC | sll0007 | gene:10499703 | gene:10499702 | Aspartate aminotransferase; ORF_ID:sll0006; gene:aspC or aat. | ORF_ID:sll0007; hypothetical protein. | 0.615 |
recG | sll0005 | gene:10499705 | gene:10499704 | DNA recombinase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA) (By similarity); Belongs to the helicase family. RecG subfamily. | ABC1-like; ORF_ID:sll0005; Belongs to the protein kinase superfamily. ADCK protein kinase family. | 0.512 |
sll0005 | aspC | gene:10499704 | gene:10499703 | ABC1-like; ORF_ID:sll0005; Belongs to the protein kinase superfamily. ADCK protein kinase family. | Aspartate aminotransferase; ORF_ID:sll0006; gene:aspC or aat. | 0.523 |
sll0005 | recG | gene:10499704 | gene:10499705 | ABC1-like; ORF_ID:sll0005; Belongs to the protein kinase superfamily. ADCK protein kinase family. | DNA recombinase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA) (By similarity); Belongs to the helicase family. RecG subfamily. | 0.512 |
sll0005 | sll0007 | gene:10499704 | gene:10499702 | ABC1-like; ORF_ID:sll0005; Belongs to the protein kinase superfamily. ADCK protein kinase family. | ORF_ID:sll0007; hypothetical protein. | 0.427 |
sll0005 | ssr1499 | gene:10499704 | gene:10498485 | ABC1-like; ORF_ID:sll0005; Belongs to the protein kinase superfamily. ADCK protein kinase family. | ORF_ID:ssr1499; unknown protein. | 0.442 |
sll0007 | aspC | gene:10499702 | gene:10499703 | ORF_ID:sll0007; hypothetical protein. | Aspartate aminotransferase; ORF_ID:sll0006; gene:aspC or aat. | 0.615 |
sll0007 | sll0005 | gene:10499702 | gene:10499704 | ORF_ID:sll0007; hypothetical protein. | ABC1-like; ORF_ID:sll0005; Belongs to the protein kinase superfamily. ADCK protein kinase family. | 0.427 |
ssr1499 | sll0005 | gene:10498485 | gene:10499704 | ORF_ID:ssr1499; unknown protein. | ABC1-like; ORF_ID:sll0005; Belongs to the protein kinase superfamily. ADCK protein kinase family. | 0.442 |