STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sll0408Putative thylakoid lumen peptidyl-prolyl cis-trans isomerase sll0408; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Required for the assembly and stabilization of PSII (By similarity). (402 aa)    
Predicted Functional Partners:
sll1033
ORF_ID:sll1033; unknown protein.
    
 
 0.954
ytfC
FKBP-type peptidyl-prolyl cis-trans isomerase; ORF_ID:slr1761.
  
 0.932
deaD
ATP-dependent RNA helicase; An ATP-dependent bidirectional RNA helicase with RNA- dependent ATPase activity; does not unwind dsDNA, uses only (d)ATP. Also has ATP-dependent RNA annealing activity; concurrent annealing and helicase activity promote strand-exchange activity. In vitro has low helicase processivity, annealing processivity is probably higher. Required for correct cold adaptation, probably by aiding translation of mRNAs required for photosynthesis and electron transport. Probably regulates the cold-shock-inducible expression of the GroESL chaperones. May partially regulate i [...]
  
 0.881
htpG
Heat shock protein; Molecular chaperone. Has ATPase activity.
  
 0.837
psaF
Photosystem I subunit III; Probably participates in efficiency of electron transfer from plastocyanin to P700 (or cytochrome c553 in algae and cyanobacteria). This plastocyanin-docking protein contributes to the specific association of plastocyanin to PSI.
  
 
   0.824
menE
O-succinylbenzoic acid--CoA ligase; ORF_ID:slr0492.
   
 
 0.757
slr2034
Ycf48-like protein; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity.
  
   
 0.752
slr0157
ORF_ID:slr0157; unknown protein.
   
 0.746
sodB
Superoxide dismutase; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.744
slr0267
Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
   
   0.728
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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