STRINGSTRING
glcD protein (Synechocystis sp. PCC6803) - STRING interaction network
"glcD" - Glycolate oxidase subunit GlcD in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glcDGlycolate oxidase subunit GlcD (492 aa)    
Predicted Functional Partners:
glcF
Glycolate oxidase subunit (Fe-S) protein (460 aa)
 
  0.997
slr0458
Hypothetical protein (211 aa)
       
  0.980
cbbZp
Phosphoglycolate phosphatase (221 aa)
       
  0.975
glcE
Glycolate oxidase subunit GlcE (434 aa)
 
0.974
slr1762
Hypothetical protein (221 aa)
       
    0.961
eda
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (206 aa)
         
  0.903
sll1559
Soluble hydrogenase 42 kDa subunit (384 aa)
   
 
  0.825
pyk2
Pyruvate kinase (591 aa)
   
  0.820
sll0402
Aspartate aminotransferase (389 aa)
   
  0.801
gcvT
Glycine cleavage system aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine (372 aa)
   
   
  0.782
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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