Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
glnH/glnP | sll0064 | gene:10498451 | gene:10499781 | Glutamine-binding periplasmic protein/glutamine transport system permease protein; ORF_ID:sll1270. | ORF_ID:sll0064; unknown protein. | 0.755 |
glnH/glnP | slr1735 | gene:10498451 | gene:10498636 | Glutamine-binding periplasmic protein/glutamine transport system permease protein; ORF_ID:sll1270. | ABC transporter; ORF_ID:slr1735. | 0.999 |
pnp | sll0064 | gene:10497516 | gene:10499781 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | ORF_ID:sll0064; unknown protein. | 0.546 |
sll0064 | glnH/glnP | gene:10499781 | gene:10498451 | ORF_ID:sll0064; unknown protein. | Glutamine-binding periplasmic protein/glutamine transport system permease protein; ORF_ID:sll1270. | 0.755 |
sll0064 | pnp | gene:10499781 | gene:10497516 | ORF_ID:sll0064; unknown protein. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.546 |
sll0064 | sll0163 | gene:10499781 | gene:10499556 | ORF_ID:sll0064; unknown protein. | Beta transducin-like protein; ORF_ID:sll0163. | 0.703 |
sll0064 | sll0875 | gene:10499781 | gene:10498462 | ORF_ID:sll0064; unknown protein. | ORF_ID:sll0875; hypothetical protein. | 0.893 |
sll0064 | slr0864 | gene:10499781 | gene:10498678 | ORF_ID:sll0064; unknown protein. | ABC transporter; ORF_ID:slr0864. | 0.789 |
sll0064 | slr0876 | gene:10499781 | gene:10498463 | ORF_ID:sll0064; unknown protein. | ORF_ID:slr0876; hypothetical protein. | 0.821 |
sll0064 | slr1098 | gene:10499781 | gene:10497613 | ORF_ID:sll0064; unknown protein. | ORF_ID:slr1098; unknown protein. | 0.819 |
sll0064 | slr1149 | gene:10499781 | gene:10498169 | ORF_ID:sll0064; unknown protein. | ABC transporter; ORF_ID:slr1149. | 0.548 |
sll0064 | slr1735 | gene:10499781 | gene:10498636 | ORF_ID:sll0064; unknown protein. | ABC transporter; ORF_ID:slr1735. | 0.803 |
sll0064 | srrA | gene:10499781 | gene:10498218 | ORF_ID:sll0064; unknown protein. | SrrA; ORF_ID:slr1897. | 0.688 |
sll0163 | sll0064 | gene:10499556 | gene:10499781 | Beta transducin-like protein; ORF_ID:sll0163. | ORF_ID:sll0064; unknown protein. | 0.703 |
sll0163 | slr0864 | gene:10499556 | gene:10498678 | Beta transducin-like protein; ORF_ID:sll0163. | ABC transporter; ORF_ID:slr0864. | 0.786 |
sll0163 | slr1149 | gene:10499556 | gene:10498169 | Beta transducin-like protein; ORF_ID:sll0163. | ABC transporter; ORF_ID:slr1149. | 0.571 |
sll0163 | srrA | gene:10499556 | gene:10498218 | Beta transducin-like protein; ORF_ID:sll0163. | SrrA; ORF_ID:slr1897. | 0.679 |
sll0875 | sll0064 | gene:10498462 | gene:10499781 | ORF_ID:sll0875; hypothetical protein. | ORF_ID:sll0064; unknown protein. | 0.893 |
sll0875 | slr0876 | gene:10498462 | gene:10498463 | ORF_ID:sll0875; hypothetical protein. | ORF_ID:slr0876; hypothetical protein. | 0.947 |
sll0875 | slr1098 | gene:10498462 | gene:10497613 | ORF_ID:sll0875; hypothetical protein. | ORF_ID:slr1098; unknown protein. | 0.893 |
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