STRINGSTRING
slr0897 protein (Synechocystis sp. PCC6803) - STRING interaction network
"slr0897" - Endo-1,4-beta-glucanase in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slr0897Endo-1,4-beta-glucanase (1070 aa)    
Predicted Functional Partners:
bgl
Beta-glucosidase (538 aa)
       
  0.963
slr1924
D-alanyl-D-alanine carboxypeptidase (400 aa)
     
 
    0.635
pbp
Penicillin-binding protein 4 (414 aa)
     
 
    0.635
sll0723
Hypothetical protein (1771 aa)
   
          0.629
gdh
Glucose dehydrogenase (248 aa)
           
  0.629
slr1028
Integrin alpha subunit protein homolog (3972 aa)
   
          0.524
slr1982
CheY subfamily protein Rre21 (123 aa)
           
  0.521
sll0177
Hypothetical protein (442 aa)
           
  0.520
slr0249
Hypothetical protein (124 aa)
           
  0.520
sll0499
Hypothetical protein (948 aa)
   
          0.491
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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