STRINGSTRING
slr0075 protein (Synechocystis sp. PCC6803) - STRING interaction network
"slr0075" - ABC transporter subunit Ycf16 in Synechocystis sp. PCC6803
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slr0075ABC transporter subunit Ycf16 (256 aa)    
Predicted Functional Partners:
slr0074
Fe-S assembly protein SufB (480 aa)
 
  0.999
slr0076
Hypothetical protein (453 aa)
 
  0.999
slr1419
Hypothetical protein (159 aa)
 
 
  0.986
csd
NifS protein; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine (420 aa)
 
 
  0.984
slr1417
Hypothetical protein (118 aa)
   
 
  0.981
slr0589
Hypothetical protein (184 aa)
           
  0.940
sll1276
ABC transporter (534 aa)
     
   
  0.926
sll0912
ABC transporter (636 aa)
         
  0.925
sll1623
ABC transporter (223 aa)
 
 
   
  0.925
slr0700
Hypothetical protein (452 aa)
         
  0.924
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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