STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slr0503ORF_ID:slr0503; hypothetical protein; Belongs to the ycf66 family. (337 aa)    
Predicted Functional Partners:
slr0505
ORF_ID:slr0505; unknown protein.
 
     0.888
slr1660
ORF_ID:slr1660; unknown protein.
  
     0.775
slr0748
ORF_ID:slr0748; unknown protein.
  
     0.774
slr1220
ORF_ID:slr1220; unknown protein.
  
     0.754
slr0116
Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family.
  
     0.717
slr1110
ORF_ID:slr1110; unknown protein.
  
     0.714
sll1372
ORF_ID:sll1372; unknown protein.
  
     0.704
sll0272
ORF_ID:sll0272; unknown protein.
  
     0.704
ssl1498
ORF_ID:ssl1498; unknown protein.
  
     0.703
slr0476
ORF_ID:slr0476; unknown protein.
  
     0.682
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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