STRINGSTRING
ssr1176 protein (Synechocystis sp. PCC6803) - STRING interaction network
"ssr1176" - Transposase in Synechocystis sp. PCC6803
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssr1176Transposase (97 aa)    
Predicted Functional Partners:
slr0302
PleD gene product homolog (768 aa)
           
  0.940
slr0322
CheA-like protein PilL/TaxAY3/Hik43 (1095 aa)
           
  0.940
sll1895
Hypothetical protein (696 aa)
           
  0.940
sll0200
Transposase (119 aa)
 
     
  0.930
sll1574
Hypothetical protein (103 aa)
           
  0.845
infA
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex (75 aa)
           
  0.754
spkA
Serine/threonine protein kinase; Protein kinase that regulates cellular motility via phosphorylation of membrane proteins (416 aa)
           
  0.716
slr2031
Sigma factor SigG regulation protein RsbU (452 aa)
           
  0.629
slr0230
Transposase (282 aa)
 
       
0.546
smr0002
Transposase (34 aa)
              0.438
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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