Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
nifS | nifS-2 | gene:10497533 | gene:10499601 | NifS protein; ORF_ID:sll0704. | NifS protein; ORF_ID:slr0387; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | 0.913 |
nifS | sll0909 | gene:10497533 | gene:10499292 | NifS protein; ORF_ID:sll0704. | ORF_ID:sll0909; unknown protein. | 0.589 |
nifS | slr0680 | gene:10497533 | gene:10497821 | NifS protein; ORF_ID:sll0704. | ORF_ID:slr0680; unknown protein. | 0.538 |
nifS | slr1565 | gene:10497533 | gene:10500476 | NifS protein; ORF_ID:sll0704. | ORF_ID:slr1565; hypothetical protein. | 0.618 |
nifS | ssl2667 | gene:10497533 | gene:10500431 | NifS protein; ORF_ID:sll0704. | NifU protein; ORF_ID:ssl2667. | 0.774 |
nifS-2 | nifS | gene:10499601 | gene:10497533 | NifS protein; ORF_ID:slr0387; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | NifS protein; ORF_ID:sll0704. | 0.913 |
nifS-2 | sll0909 | gene:10499601 | gene:10499292 | NifS protein; ORF_ID:slr0387; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | ORF_ID:sll0909; unknown protein. | 0.589 |
nifS-2 | slr0680 | gene:10499601 | gene:10497821 | NifS protein; ORF_ID:slr0387; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | ORF_ID:slr0680; unknown protein. | 0.538 |
nifS-2 | slr1565 | gene:10499601 | gene:10500476 | NifS protein; ORF_ID:slr0387; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | ORF_ID:slr1565; hypothetical protein. | 0.636 |
nifS-2 | ssl2667 | gene:10499601 | gene:10500431 | NifS protein; ORF_ID:slr0387; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | NifU protein; ORF_ID:ssl2667. | 0.704 |
rpoF | slr1565 | gene:10500475 | gene:10500476 | RNA polymerase sigma-37; ORF_ID:slr1564; Belongs to the sigma-70 factor family. | ORF_ID:slr1565; hypothetical protein. | 0.494 |
rpoF | slr1566 | gene:10500475 | gene:10500477 | RNA polymerase sigma-37; ORF_ID:slr1564; Belongs to the sigma-70 factor family. | ORF_ID:slr1566; unknown protein. | 0.495 |
sll0909 | nifS | gene:10499292 | gene:10497533 | ORF_ID:sll0909; unknown protein. | NifS protein; ORF_ID:sll0704. | 0.589 |
sll0909 | nifS-2 | gene:10499292 | gene:10499601 | ORF_ID:sll0909; unknown protein. | NifS protein; ORF_ID:slr0387; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | 0.589 |
sll0909 | slr1565 | gene:10499292 | gene:10500476 | ORF_ID:sll0909; unknown protein. | ORF_ID:slr1565; hypothetical protein. | 0.598 |
slr0635 | slr1565 | gene:10499854 | gene:10500476 | ORF_ID:slr0635; unknown protein; Belongs to the GcvT family. | ORF_ID:slr1565; hypothetical protein. | 0.629 |
slr0680 | nifS | gene:10497821 | gene:10497533 | ORF_ID:slr0680; unknown protein. | NifS protein; ORF_ID:sll0704. | 0.538 |
slr0680 | nifS-2 | gene:10497821 | gene:10499601 | ORF_ID:slr0680; unknown protein. | NifS protein; ORF_ID:slr0387; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | 0.538 |
slr0680 | slr1565 | gene:10497821 | gene:10500476 | ORF_ID:slr0680; unknown protein. | ORF_ID:slr1565; hypothetical protein. | 0.551 |
slr1098 | slr1565 | gene:10497613 | gene:10500476 | ORF_ID:slr1098; unknown protein. | ORF_ID:slr1565; hypothetical protein. | 0.996 |
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