STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slr1565ORF_ID:slr1565; hypothetical protein. (113 aa)    
Predicted Functional Partners:
slr1098
ORF_ID:slr1098; unknown protein.
    
 
 0.996
slr1566
ORF_ID:slr1566; unknown protein.
       0.768
slr1846
Uncharacterized monothiol glutaredoxin ycf64-like; ORF_ID:slr1846; hypothetical protein; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 0.689
nifS-2
NifS protein; ORF_ID:slr0387; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.636
ssl2667
NifU protein; ORF_ID:ssl2667.
  
 
 0.633
slr0635
ORF_ID:slr0635; unknown protein; Belongs to the GcvT family.
 
 
 0.629
nifS
NifS protein; ORF_ID:sll0704.
 
  
 0.618
sll0909
ORF_ID:sll0909; unknown protein.
  
 
 0.598
slr0680
ORF_ID:slr0680; unknown protein.
  
 
 0.551
rpoF
RNA polymerase sigma-37; ORF_ID:slr1564; Belongs to the sigma-70 factor family.
       0.494
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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