STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slr0454Cation or drug efflux system protein; ORF_ID:slr0454. (909 aa)    
Predicted Functional Partners:
secD
Protein-export membrane protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
   
 0.922
slr1753
ORF_ID:slr1753; unknown protein.
      
 0.897
sll1586
ORF_ID:sll1586; unknown protein.
      
 0.892
ssr1480
RNA-binding protein; ORF_ID:ssr1480.
      
 0.820
slr0798
Unknown protein; ORF_ID:slr0798; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.
 
 
  
 0.811
slr1302
ORF_ID:slr1302; unknown protein.
      
 0.781
sll1053
ORF_ID:sll1053; hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.719
sll0141
ORF_ID:sll0141; hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.708
sll0180
ORF_ID:sll0180; unknown protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.664
slr1270
ORF_ID:slr1270; unknown protein.
 
 0.604
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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