STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yycF_3Transcriptional regulatory protein YycF. (229 aa)    
Predicted Functional Partners:
yycG_2
Sensor histidine kinase YycG.
  0.976
pleC
Non-motile and phage-resistance protein.
  
 0.970
yycG_4
Sensor histidine kinase YycG.
 0.892
phoR_3
Alkaline phosphatase synthesis sensor protein phoR.
 
  0.885
phoR_5
Alkaline phosphatase synthesis sensor protein phoR.
  0.866
phoR_1
Alkaline phosphatase synthesis sensor protein phoR.
 0.842
yycG_1
Sensor histidine kinase YycG.
  0.840
kinA
Sporulation kinase A.
 
 0.822
CUO18809.1
Lipoprotein LpqB.
 
   
 0.820
senX3_3
Signal-transduction histidine kinase senX3.
 
  0.808
Your Current Organism:
Fusicatenibacter saccharivorans
NCBI taxonomy Id: 1150298
Other names: Clostridium sp. HT03-11, Clostridium sp. HT03-14, Clostridium sp. HT03-186, Clostridium sp. HT03-22, Clostridium sp. KO-38, Clostridium sp. TT-111, DSM 26062, F. saccharivorans, Fusicatenibacter saccharivorans Takada et al. 2013, JCM 18507, YIT 12554, strain HT03-11
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.