STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG07064.1ABC-type protease/lipase transport system,ATPase and permease components. (590 aa)    
Predicted Functional Partners:
CCG07063.1
Type I secretion membrane fusion protein, HlyD.
 
 0.989
CCG08620.1
ABC transporter component.
 
     
0.897
CCG09565.1
ABC transporter component.
 
     
0.893
CCG07882.1
ABC transporter, transmembrane region.
 
     
0.887
CCG07417.1
Peptidase M10A and M12B, matrixin and adamalysin.
 
  
 0.836
CCG09655.1
Outer membrane efflux protein.
 
  
 0.742
CCG08936.1
Putative outer membrane secretion protein-like protein.
 
  
 0.741
CCG09580.1
Toxin secretion ATP-binding protein.
 
 
0.718
CCG09058.1
Membrane-fusion protein.
 
 
 0.685
CCG09537.1
Type I secretion outer membrane protein, TolC.
 
  
 0.677
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.