STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG08480.1Diheme cytochrome c. (157 aa)    
Predicted Functional Partners:
CCG08479.1
Putative uncharacterized protein.
 
  
 0.952
CCG06904.1
Putative uncharacterized protein.
  
     0.538
CCG07274.1
PAS:GGDEF.
   
 
 0.526
CCG08446.1
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S).
   
 
 0.526
CCG06907.1
Diguanylate cyclase/phosphodiesterase.
   
 
 0.521
CCG07460.1
Predicted signal transduction protein.
   
 
 0.521
CCG08707.1
Peptidase propeptide and YPEB domain protein,putative.
 
     0.472
CCG07225.1
Cyclic nucleotide-binding domain (CNMP-BD) protein.
  
     0.439
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.