STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LFE_1167Putative nitrogenase associated protein; Belongs to the ArsC family. (134 aa)    
Predicted Functional Partners:
LFE_1166
Hypothetical protein.
   
 0.944
LFE_1168
Hypothetical protein.
 
     0.920
LFE_1169
Putative iron-sulfur cofactor synthesis protein.
 
     0.823
rpoA
Putative DNA directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.779
rpoC
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.776
rpoZ
Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.775
LFE_2406
Hypothetical protein.
  
     0.775
LFE_0992
Putative RNA polymerase, sigma-70 subunit, RpoD family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
   0.769
rpoD
RNA polymerase, sigma 70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
   0.769
LFE_2407
Hypothetical protein.
  
     0.762
Your Current Organism:
Leptospirillum ferrooxidans
NCBI taxonomy Id: 1162668
Other names: L. ferrooxidans C2-3, Leptospirillum ferrooxidans C2-3, Leptospirillum ferrooxidans str. C2-3, Leptospirillum ferrooxidans strain C2-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.