STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UWK_00992PFAM: Protein of unknown function (DUF1207). (370 aa)    
Predicted Functional Partners:
UWK_01461
RNA polymerase, sigma subunit, SigZ; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, SigZ family; RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
   0.550
UWK_01472
PFAM: Radical SAM superfamily; 4Fe-4S single cluster domain.
  
     0.495
UWK_00991
PFAM: Carbohydrate phosphorylase; Protein of unknown function (DUF3417); TIGRFAM: alpha-glucan phosphorylases.
       0.478
UWK_01524
PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
    
   0.475
UWK_01737
Hypothetical protein.
  
     0.466
truA
Pseudouridylate synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
    0.441
UWK_02472
PFAM: uncharacterized protein family (UPF0104); TIGRFAM: conserved hypothetical protein.
  
     0.438
UWK_00993
Hypothetical protein.
       0.434
UWK_00252
PFAM: SAF-like; TIGRFAM: Flp pilus assembly protein CpaB.
  
     0.425
UWK_00799
Type II secretory pathway, component HofQ; PFAM: AMIN domain; Secretin and TonB N terminus short domain; TPR repeat.
   
  
 0.408
Your Current Organism:
Desulfocapsa sulfexigens
NCBI taxonomy Id: 1167006
Other names: D. sulfexigens DSM 10523, Desulfocapsa sulfexigens DSM 10523, Desulfocapsa sulfexigens SB164P1, Desulfocapsa sulfexigens str. DSM 10523, Desulfocapsa sulfexigens strain DSM 10523
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.