STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UWK_02689FHA domain-containing protein; PFAM: FHA domain. (340 aa)    
Predicted Functional Partners:
UWK_02690
PFAM: Protein of unknown function (DUF877).
 
     0.859
UWK_02684
Peroxiredoxin; PFAM: TPR repeat; AhpC/TSA family; Curli production assembly/transport component CsgG.
 
     0.854
UWK_02685
PFAM: Protein kinase domain; PEGA domain.
 
 
 
 0.791
UWK_02688
Hypothetical protein.
       0.773
UWK_02708
PFAM: Uncharacterized protein conserved in bacteria (DUF2077); TIGRFAM: type IV / VI secretion system protein, DotU family.
 
     0.720
UWK_02707
Hypothetical protein; PFAM: ImcF-related N-terminal domain.
 
     0.718
UWK_02709
PFAM: Bacterial protein of unknown function (DUF876); TIGRFAM: type VI secretion protein, VC_A0114 family.
 
     0.661
UWK_02702
PFAM: Gene 25-like lysozyme; TIGRFAM: type VI secretion system lysozyme-related protein.
 
     0.648
UWK_02687
PFAM: Protein phosphatase 2C.
 
 
 0.646
UWK_03086
Flagellar motor switch protein FliN; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN.
  
 
 0.618
Your Current Organism:
Desulfocapsa sulfexigens
NCBI taxonomy Id: 1167006
Other names: D. sulfexigens DSM 10523, Desulfocapsa sulfexigens DSM 10523, Desulfocapsa sulfexigens SB164P1, Desulfocapsa sulfexigens str. DSM 10523, Desulfocapsa sulfexigens strain DSM 10523
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