Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
UWK_02684 | UWK_02685 | Peroxiredoxin; PFAM: TPR repeat; AhpC/TSA family; Curli production assembly/transport component CsgG. | PFAM: Protein kinase domain; PEGA domain. | 0.729 |
UWK_02684 | UWK_02687 | Peroxiredoxin; PFAM: TPR repeat; AhpC/TSA family; Curli production assembly/transport component CsgG. | PFAM: Protein phosphatase 2C. | 0.740 |
UWK_02684 | UWK_02688 | Peroxiredoxin; PFAM: TPR repeat; AhpC/TSA family; Curli production assembly/transport component CsgG. | Hypothetical protein. | 0.462 |
UWK_02684 | UWK_02689 | Peroxiredoxin; PFAM: TPR repeat; AhpC/TSA family; Curli production assembly/transport component CsgG. | FHA domain-containing protein; PFAM: FHA domain. | 0.854 |
UWK_02684 | UWK_02690 | Peroxiredoxin; PFAM: TPR repeat; AhpC/TSA family; Curli production assembly/transport component CsgG. | PFAM: Protein of unknown function (DUF877). | 0.765 |
UWK_02684 | UWK_02702 | Peroxiredoxin; PFAM: TPR repeat; AhpC/TSA family; Curli production assembly/transport component CsgG. | PFAM: Gene 25-like lysozyme; TIGRFAM: type VI secretion system lysozyme-related protein. | 0.686 |
UWK_02684 | UWK_02707 | Peroxiredoxin; PFAM: TPR repeat; AhpC/TSA family; Curli production assembly/transport component CsgG. | Hypothetical protein; PFAM: ImcF-related N-terminal domain. | 0.615 |
UWK_02684 | UWK_02708 | Peroxiredoxin; PFAM: TPR repeat; AhpC/TSA family; Curli production assembly/transport component CsgG. | PFAM: Uncharacterized protein conserved in bacteria (DUF2077); TIGRFAM: type IV / VI secretion system protein, DotU family. | 0.605 |
UWK_02684 | UWK_02709 | Peroxiredoxin; PFAM: TPR repeat; AhpC/TSA family; Curli production assembly/transport component CsgG. | PFAM: Bacterial protein of unknown function (DUF876); TIGRFAM: type VI secretion protein, VC_A0114 family. | 0.539 |
UWK_02685 | UWK_02684 | PFAM: Protein kinase domain; PEGA domain. | Peroxiredoxin; PFAM: TPR repeat; AhpC/TSA family; Curli production assembly/transport component CsgG. | 0.729 |
UWK_02685 | UWK_02687 | PFAM: Protein kinase domain; PEGA domain. | PFAM: Protein phosphatase 2C. | 0.983 |
UWK_02685 | UWK_02688 | PFAM: Protein kinase domain; PEGA domain. | Hypothetical protein. | 0.520 |
UWK_02685 | UWK_02689 | PFAM: Protein kinase domain; PEGA domain. | FHA domain-containing protein; PFAM: FHA domain. | 0.791 |
UWK_02685 | UWK_02690 | PFAM: Protein kinase domain; PEGA domain. | PFAM: Protein of unknown function (DUF877). | 0.599 |
UWK_02687 | UWK_02684 | PFAM: Protein phosphatase 2C. | Peroxiredoxin; PFAM: TPR repeat; AhpC/TSA family; Curli production assembly/transport component CsgG. | 0.740 |
UWK_02687 | UWK_02685 | PFAM: Protein phosphatase 2C. | PFAM: Protein kinase domain; PEGA domain. | 0.983 |
UWK_02687 | UWK_02688 | PFAM: Protein phosphatase 2C. | Hypothetical protein. | 0.520 |
UWK_02687 | UWK_02689 | PFAM: Protein phosphatase 2C. | FHA domain-containing protein; PFAM: FHA domain. | 0.646 |
UWK_02687 | UWK_02690 | PFAM: Protein phosphatase 2C. | PFAM: Protein of unknown function (DUF877). | 0.725 |
UWK_02687 | UWK_02707 | PFAM: Protein phosphatase 2C. | Hypothetical protein; PFAM: ImcF-related N-terminal domain. | 0.456 |
page 1 of 4