W97_05152 protein (Coniosporium apollinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W97_05152

Uncharacterized protein. (1876 aa)

Predicted Functional Partners:

W97_06737

0.897

W97_04816

0.738

W97_05771

0.738

W97_01597

0.723

W97_03024

0.715

W97_03693

0.689

W97_04390

0.688

W97_05065

0.677

W97_05836

0.677

W97_04205

0.676

Your Current Organism:

Coniosporium apollinis

NCBI taxonomy Id: 1168221
Other names: C. apollinis CBS 100218, Coniosporium apollinis CBS 100218, Coniosporium apollinis CBS 352.97

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W97_01597	W97_03024	R7YKE4	R7YQ57	Uncharacterized protein.	DNA repair and recombination protein RAD54 and RAD54-like protein.	0.819
W97_01597	W97_04205	R7YKE4	R7YSU6	Uncharacterized protein.	3'-5' exonuclease domain-containing protein.	0.838
W97_01597	W97_04390	R7YKE4	R7YTJ0	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.483
W97_01597	W97_04816	R7YKE4	R7YUQ4	Uncharacterized protein.	Histone H3; Belongs to the histone H3 family.	0.442
W97_01597	W97_05065	R7YKE4	R7YVE7	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.522
W97_01597	W97_05152	R7YKE4	R7YVF0	Uncharacterized protein.	Uncharacterized protein.	0.723
W97_01597	W97_05771	R7YKE4	R7YXZ1	Uncharacterized protein.	Histone domain-containing protein.	0.442
W97_01597	W97_05836	R7YKE4	R7YXF7	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.522
W97_01597	W97_06737	R7YKE4	R7Z070	Uncharacterized protein.	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	0.963
W97_03024	W97_01597	R7YQ57	R7YKE4	DNA repair and recombination protein RAD54 and RAD54-like protein.	Uncharacterized protein.	0.819
W97_03024	W97_04205	R7YQ57	R7YSU6	DNA repair and recombination protein RAD54 and RAD54-like protein.	3'-5' exonuclease domain-containing protein.	0.838
W97_03024	W97_04390	R7YQ57	R7YTJ0	DNA repair and recombination protein RAD54 and RAD54-like protein.	Histone H2B; Belongs to the histone H2B family.	0.483
W97_03024	W97_04816	R7YQ57	R7YUQ4	DNA repair and recombination protein RAD54 and RAD54-like protein.	Histone H3; Belongs to the histone H3 family.	0.442
W97_03024	W97_05065	R7YQ57	R7YVE7	DNA repair and recombination protein RAD54 and RAD54-like protein.	Histone H2A; Belongs to the histone H2A family.	0.522
W97_03024	W97_05152	R7YQ57	R7YVF0	DNA repair and recombination protein RAD54 and RAD54-like protein.	Uncharacterized protein.	0.715
W97_03024	W97_05771	R7YQ57	R7YXZ1	DNA repair and recombination protein RAD54 and RAD54-like protein.	Histone domain-containing protein.	0.442
W97_03024	W97_05836	R7YQ57	R7YXF7	DNA repair and recombination protein RAD54 and RAD54-like protein.	Histone H2A; Belongs to the histone H2A family.	0.522
W97_03024	W97_06737	R7YQ57	R7Z070	DNA repair and recombination protein RAD54 and RAD54-like protein.	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	0.963
W97_03693	W97_05152	R7YS16	R7YVF0	USP domain-containing protein.	Uncharacterized protein.	0.689
W97_04205	W97_01597	R7YSU6	R7YKE4	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.838