STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_14629Importin N-terminal domain-containing protein. (1241 aa)    
Predicted Functional Partners:
Vbra_6492
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
    
 
 0.663
Vbra_8701
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
    
 
 0.478
Vbra_6820
Importin N-terminal domain-containing protein.
      
 0.440
Vbra_3166
Importin N-terminal domain-containing protein.
      
 0.440
Vbra_22166
Uncharacterized protein.
      
 0.440
Vbra_21700
Importin N-terminal domain-containing protein.
      
 0.439
Vbra_3442
Importin N-terminal domain-containing protein.
      
 0.439
Vbra_15299
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
 
  0.416
Vbra_3972
Uncharacterized protein.
    
   0.412
Vbra_21452
Uncharacterized protein; Belongs to the DEAD box helicase family.
    
   0.412
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.