STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_22604Helicase ATP-binding domain-containing protein. (880 aa)    
Predicted Functional Partners:
Vbra_20959
General transcription factor IIH subunit.
    
 0.996
Vbra_8686
Uncharacterized protein.
   
 0.996
Vbra_9389
RING-type domain-containing protein.
    
 0.996
Vbra_18100
Uncharacterized protein.
    
 0.996
Vbra_3192
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.995
Vbra_21561
TFIIE domain-containing protein.
   
 0.992
Vbra_9400
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.991
Vbra_13255
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.988
Vbra_11779
TFIIB-type domain-containing protein.
    
 0.984
Vbra_22072
XPA_C domain-containing protein.
    
 0.981
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
Server load: low (28%) [HD]