STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_99Ubiquitin-like domain-containing protein. (417 aa)    
Predicted Functional Partners:
Vbra_7630
SANT_DAMP1_like domain-containing protein.
    
 0.910
Vbra_6836
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.903
Vbra_5673
Uncharacterized protein.
    
 0.891
Vbra_11646
YL1_C domain-containing protein.
   
 0.868
Vbra_8971
Uncharacterized protein.
    
 0.840
Vbra_12374
Uncharacterized protein.
    
 0.831
Vbra_8265
Enhancer of polycomb-like protein.
    
 0.828
Vbra_4327
Uncharacterized protein.
    
 0.828
Vbra_22203
RuvB-like helicase; Belongs to the RuvB family.
    
 0.815
Vbra_18573
RuvB-like helicase; Belongs to the RuvB family.
    
 0.801
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.