STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_9667Uncharacterized protein. (327 aa)    
Predicted Functional Partners:
Vbra_15673
Triosephosphate isomerase.
  
 0.794
Vbra_16848
Triosephosphate isomerase.
  
 0.794
Vbra_4728
Uncharacterized protein.
  
 0.775
Vbra_12143
Uncharacterized protein.
  
 0.775
Vbra_12361
Glucose-6-phosphate isomerase; Belongs to the GPI family.
   
 
 0.750
Vbra_7324
Suf domain-containing protein.
    
 0.737
Vbra_20104
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
 0.719
Vbra_11555
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
 0.719
Vbra_13196
Uncharacterized protein.
   
 0.716
Vbra_9014
Uncharacterized protein.
   
 0.716
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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