STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_22174Beta_elim_lyase domain-containing protein. (355 aa)    
Predicted Functional Partners:
Vbra_11341
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.
    
 0.785
Vbra_13390
Aminotran_5 domain-containing protein.
    
 0.785
Vbra_16941
Threonine dehydratase.
  
 
 0.780
Vbra_16654
Uncharacterized protein.
  
 0.756
Vbra_17615
Uncharacterized protein.
  
 0.756
Vbra_21808
PALP domain-containing protein.
  
 
 0.747
Vbra_20343
Uncharacterized protein.
    
 0.740
Vbra_2598
Aminotran_1_2 domain-containing protein.
    
 0.740
Vbra_9930
Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.714
Vbra_7092
Thioredoxin domain-containing protein.
    
 0.706
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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