STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_22870Uncharacterized protein. (895 aa)    
Predicted Functional Partners:
Vbra_13028
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.674
Vbra_22822
Protein kinase domain-containing protein.
   
 0.674
Vbra_18008
Uncharacterized protein.
   
 
 0.632
Vbra_17671
Uncharacterized protein.
   
 0.579
Vbra_7762
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 0.558
Vbra_10634
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 0.558
Vbra_3296
CAP-Gly domain-containing protein.
    
 
 0.547
Vbra_15546
PPM-type phosphatase domain-containing protein.
    
 0.528
Vbra_12688
Uncharacterized protein.
    
 0.521
Vbra_13838
Protein kinase domain-containing protein.
    
 0.521
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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