STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
AFZ13294.1PFAM: FAD dependent oxidoreductase; TIGRFAM: geranylgeranyl reductase family; COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR006076:IPR011777; KEGG: ava:Ava_0630 geranylgeranyl reductase; PFAM: FAD dependent oxidoreductase; SPTR: Geranylgeranyl reductase; TIGRFAM: Geranylgeranyl reductase, plant/prokaryotic; manually curated. (378 aa)    
Predicted Functional Partners:
AFZ12317.1
Chlorophyll synthase; PFAM: UbiA prenyltransferase family; TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; chlorophyll synthase, ChlG; COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537:IPR011799:IPR006372; KEGG: cyj:Cyan7822_3054 bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; PRIAM: Chlorophyll synthase; SPTR: Bacteriochlorophyll/chlorophyll synthetase; TIGRFAM: Chlorophyll synthase, ChlG; Bacteriochlorophyll/chlorophyll synthetase.
 
  
 0.610
AFZ14268.1
Protoporphyrin IX magnesium-chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
  
 0.591
AFZ14752.1
Beta-lactamase domain protein; InterPro IPR001279; KEGG: npu:Npun_R5521 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: Putative uncharacterized protein.
 
    0.533
chlB
Ferredoxin protochlorophyllide reductase subunit B; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (ChlN-ChlB) is the catalytic component of the complex.
  
  
 0.532
chlN
Ferredoxin protochlorophyllide reductase subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (ChlN-ChlB) is the catalytic component of the complex.
  
  
 0.473
AFZ13270.1
Cobaltochelatase CobN subunit; PFAM: Domain of unknown function (DUF3479); CobN/Magnesium Chelatase; TIGRFAM: magnesium chelatase, H subunit; cobaltochelatase, CobN subunit; COGs: COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatase; InterPro IPR003672:IPR011771; KEGG: ana:all4365 magnesium chelatase subunit H; PFAM: CobN/magnesium chelatase; PRIAM: Magnesium chelatase; SPTR: Protoporphyrin IX magnesium chelatase; TIGRFAM: Magnesium-chelatase, subunit H.
  
  
 0.432
acsF
Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family.
  
  
 0.428
Your Current Organism:
Crinalium epipsammum
NCBI taxonomy Id: 1173022
Other names: C. epipsammum PCC 9333, Crinalium epipsammum PCC 9333, Crinalium sp. PCC 9333
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