STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ13867.1Ribonuclease, Rne/Rng family; PFAM: Ribonuclease E/G family; S1 RNA binding domain; COGs: COG1530 Ribonuclease G and E; InterPro IPR022967:IPR003029:IPR019307:IPR004659; KEGG: ava:Ava_1281 ribonuclease E and G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA-binding domain; PRIAM: Ribonuclease E; SMART: RNA-binding domain, S1; SPTR: Ribonuclease; TIGRFAM: Ribonuclease E/G. (769 aa)    
Predicted Functional Partners:
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.980
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
    
 
 0.891
AFZ15145.1
PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001:IPR001650:IPR011545; KEGG: npu:Npun_F4515 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family.
    
 
 0.807
rnhB
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
  
 0.793
AFZ13238.1
COGs: COG1837 RNA-binding protein (contains KH domain); KEGG: npu:Npun_F2859 hypothetical protein; SPTR: Putative uncharacterized protein.
    
   0.678
AFZ11211.1
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
 
  
 0.628
AFZ12603.1
Single-stranded nucleic acid binding R3H domain-containing protein; PFAM: ATPase family associated with various cellular activities (AAA); R3H domain; COGs: COG3854 conserved hypothetical protein; InterPro IPR001374:IPR003593; KEGG: ava:Ava_0126 single-stranded nucleic acid binding R3H; PFAM: Single-stranded nucleic acid binding R3H; SMART: Single-stranded nucleic acid binding R3H; ATPase, AAA+ type, core; SPTR: R3H domain protein.
   
   0.552
AFZ13588.1
PFAM: R3H domain; COGs: COG1847 RNA-binding protein; InterPro IPR001374; KEGG: cyj:Cyan7822_2795 single-stranded nucleic acid-binding R3H domain-containing protein; PFAM: Single-stranded nucleic acid binding R3H; SMART: Single-stranded nucleic acid binding R3H; SPTR: Single-stranded nucleic acid binding R3H domain protein.
   
   0.552
ftsY
Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
  
  
 0.546
AFZ12799.1
Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
 
    0.526
Your Current Organism:
Crinalium epipsammum
NCBI taxonomy Id: 1173022
Other names: C. epipsammum PCC 9333, Crinalium epipsammum PCC 9333, Crinalium sp. PCC 9333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.