STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_07128DnaJ subfamily C member 8. (233 aa)    
Predicted Functional Partners:
N307_05733
Splicing factor 3A subunit 2.
    
   0.686
N307_14187
Splicing factor 3A subunit 2.
    
   0.657
N307_06903
Protein POF1B.
    
   0.653
N307_09913
ATP-dependent RNA helicase A.
   
  0.586
N307_09914
ATP-dependent RNA helicase A.
   
  0.586
N307_10731
RNA-binding protein 39.
   
  0.573
N307_14324
U11/U12 small nuclear ribonucleoprotein 48 kDa protein.
    
  0.552
N307_12925
Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.
    
  0.547
N307_01348
Keratin.
   
  0.545
N307_01347
Keratin.
   
  0.545
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.