STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_06571Chromodomain-helicase-DNA-binding protein 5. (1787 aa)    
Predicted Functional Partners:
N307_04610
AT-rich interactive domain-containing protein 4B.
    
 0.978
N307_08484
AT-rich interactive domain-containing protein 4A.
    
 0.978
N307_11942
Methyl-CpG-binding domain protein 3.
    
 0.916
N307_13607
Histone-binding protein RBBP7.
   
 0.902
N307_14663
Histone-binding protein RBBP4.
   
 0.902
N307_05740
Transcriptional repressor p66-alpha.
   
 0.889
N307_15479
Metastasis-associated protein MTA1.
   
 0.886
N307_00597
Transcriptional repressor p66-beta.
   
 0.886
N307_06026
Metastasis-associated protein MTA3.
   
 0.886
N307_01104
Histone deacetylase 2.
   
 0.863
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.