STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_05727Coiled-coil domain-containing protein 94. (181 aa)    
Predicted Functional Partners:
N307_01088
Pre-mRNA-processing factor 17.
    
 0.997
N307_12967
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
   
 0.997
N307_03808
Pleiotropic regulator 1.
    
 
 0.994
N307_02959
Cell division cycle 5-like.
    
 
 0.994
N307_07706
Protein BUD31.
    
 
 0.993
N307_04198
Pre-mRNA-splicing factor CWC22.
    
 0.990
N307_14709
Pre-mRNA-splicing factor SYF2.
    
 0.990
N307_14324
U11/U12 small nuclear ribonucleoprotein 48 kDa protein.
   
 0.980
N307_11536
SNW domain-containing protein 1.
    
 
 0.977
N307_13466
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
    
 0.975
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.