STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_13967ATP-binding cassette sub-family A member 13. (618 aa)    
Predicted Functional Partners:
N307_13969
ATP-binding cassette sub-family A member 13.
 
    
 0.882
N307_01872
Retinal-specific ATP-binding cassette transporter.
 
  
 
 0.631
N307_12539
Apolipoprotein A-I.
    
 0.629
N307_01628
Oxysterols receptor LXR-alpha.
    
 0.572
N307_06697
Bile acid receptor.
    
 0.569
N307_12999
ATP-binding cassette sub-family A member 5.
 
  
 
 0.554
N307_09329
ATP synthase subunit gamma.
  
   0.525
N307_04713
Retinoic acid receptor RXR-gamma.
    
  0.525
N307_04836
Retinoic acid receptor RXR-alpha.
    
  0.525
N307_11750
DHQ_synthase domain-containing protein.
     
 0.505
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.