STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_10846COMM domain-containing protein 4. (198 aa)    
Predicted Functional Partners:
N307_05702
UBX domain-containing protein 7.
   
 
  0.964
N307_03253
COMM domain-containing protein 2.
    
 0.954
N307_08972
COMM domain-containing protein 5.
   
 0.939
N307_04493
COMM domain-containing protein 9.
   
 0.935
N307_03916
COMM domain-containing protein 6.
    
 0.916
N307_12259
COMM domain-containing protein 10.
    
 0.910
N307_04190
DnaJ subfamily C member 10.
   
 0.876
N307_02867
COMM domain-containing protein 7.
    
0.871
N307_11388
Coiled-coil domain-containing protein 93.
    
 
 0.811
N307_03699
Down syndrome critical region protein 3.
    
 
 0.794
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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