STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A11Q_2447Hypothetical protein. (245 aa)    
Predicted Functional Partners:
A11Q_2446
Hypothetical protein.
 
  
 0.951
A11Q_2445
Hypothetical protein.
 
  
 0.912
A11Q_2444
Hypothetical protein.
       0.786
speE
Spermidine synthase; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the spermidine/spermine synthase family.
  
  
 0.612
A11Q_1511
Molybdopterin oxidoreductase, iron-sulfur binding subunit; COG0437C.
     
 0.609
A11Q_245
Hypothetical protein.
     
 0.548
A11Q_1153
Hypothetical protein.
 
  
 0.521
A11Q_1154
Hypothetical protein.
 
  
 0.514
murB
Hypothetical protein; Cell wall formation.
     
 0.498
A11Q_594
Hypothetical protein.
 
  
 0.497
Your Current Organism:
Bdellovibrio exovorus
NCBI taxonomy Id: 1184267
Other names: B. exovorus JSS, Bdellovibrio exovorus JSS, Bdellovibrio exovorus str. JSS, Bdellovibrio exovorus strain JSS, Bdellovibrio sp. JSS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.