STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_01886OmpA/MotB domain protein. (438 aa)    
Predicted Functional Partners:
BN8_05757
OmpA/MotB domain protein.
 
   0.827
ompA
OmpA/MotB domain protein.
  
     0.747
oprF3
Outer membrane porin F.
  
     0.670
BN8_05542
OmpA/MotB domain protein.
  
     0.627
BN8_06212
OmpA/MotB domain protein.
  
 
 0.605
BN8_05590
OmpA/MotB domain protein.
  
  
0.595
BN8_00054
OmpA/MotB domain protein.
  
     0.591
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
     0.583
oprF1
Outer membrane porin F.
  
     0.570
BN8_01087
Competence/damage-inducible protein CinA; Belongs to the CinA family.
    
  0.570
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.