STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A33Q_3631Carboxymuconolactone decarboxylase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (110 aa)    
Predicted Functional Partners:
A33Q_3630
Radical SAM.
 
    0.952
A33Q_3629
Glycosyltransferase.
 
     0.928
A33Q_3628
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE.
 
     0.922
A33Q_3626
Glycosyl transferase.
 
     0.842
A33Q_1678
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B; Belongs to the 3-oxoacid CoA-transferase family.
  
 
 0.798
A33Q_2947
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B.
  
 
 0.798
A33Q_3625
Long-chain-fatty-acid--CoA ligase.
       0.762
A33Q_3627
Hypothetical protein.
       0.762
icmF
B12 binding domain protein; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
    
  0.667
A33Q_1957
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.646
Your Current Organism:
Indibacter alkaliphilus
NCBI taxonomy Id: 1189612
Other names: I. alkaliphilus LW1, Indibacter alkaliphilus LW1, Indibacter alkaliphilus str. LW1, Indibacter alkaliphilus strain LW1
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