STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JBW_01916KEGG: ABC transporter; SMART: AAA ATPase; PFAM: ABC transporter related protein. (242 aa)    
Predicted Functional Partners:
JBW_01917
PFAM: ABC-type transporter, integral membrane subunit; KEGG: ABC transporter.
 
 0.999
JBW_03377
KEGG: heavy metal ABC transporter substrate-binding protein; PFAM: ABC-type metal ion transporter, periplasmic subunit; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.990
JBW_01915
PFAM: ferric-uptake regulator; KEGG: ferric uptake regulator, fur family; Belongs to the Fur family.
  
  
 0.893
JBW_04233
Hypothetical protein; KEGG: ABC-type multidrug transport system, permease component.
 
    0.618
JBW_00091
KEGG: heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase, ATPase, P-type (transporting), HAD superfamily, subfamily IC, copper-translocating P-type ATPase, cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein, Haloacid dehalogenase domain protein hydrolase, Heavy metal transport/detoxification protein.
 
   
 0.604
dnaK
Chaperone protein dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
   
 0.598
JBW_04142
Heat shock protein 70; KEGG: hscC, molecular chaperone DnaK; PFAM: Heat shock protein 70.
 
   
 0.594
JBW_03452
SMART: Iron dependent repressor, diptheria toxin type; PFAM: Iron dependent repressor, N-terminal, iron dependent repressor; KEGG: Mn-dependent transcriptional regulator.
  
  
 0.591
cysS
TIGRFAM: cysteinyl-tRNA synthetase; KEGG: cysteinyl-tRNA synthetase; HAMAP : Cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase/mycothiol ligase, Cysteinyl-tRNA synthetase class Ia DALR; SMART: Cysteinyl-tRNA synthetase class Ia DALR; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.590
JBW_04174
SMART: heat shock protein DnaJ domain protein; PFAM: heat shock protein DnaJ domain protein; KEGG: hypothetical protein.
 
 
 
 0.583
Your Current Organism:
Pelosinus fermentans
NCBI taxonomy Id: 1192197
Other names: P. fermentans JBW45, Pelosinus fermentans JBW45, Pelosinus fermentans str. JBW45, Pelosinus fermentans strain JBW45
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