STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE38199.1Planctomycete cytochrome C. (157 aa)    
Predicted Functional Partners:
SHF34338.1
Tat (twin-arginine translocation) pathway signal sequence.
  
     0.744
SHE38156.1
Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family.
       0.737
SHF43406.1
Repeat domain-containing protein.
  
     0.729
SHE45740.1
Trehalose utilisation.
  
     0.683
SHF92395.1
Planctomycete cytochrome C.
  
     0.680
SHF92350.1
Protein of unknown function.
  
     0.667
SHF34817.1
Type 1 glutamine amidotransferase (GATase1).
  
     0.613
SHF33981.1
Xylose isomerase-like TIM barrel.
  
     0.588
SHG50669.1
Hypothetical protein.
  
     0.586
SHG50797.1
Putative membrane-bound dehydrogenase domain-containing protein.
  
     0.570
Your Current Organism:
Aliifodinibius roseus
NCBI taxonomy Id: 1194090
Other names: A. roseus, ACCC 10715, Aliifodinibius roseus Wang et al. 2013, Bacteroidetes bacterium YIM D15, DSM 21986, KCTC 23442, YIM D15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.