STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH71656.1Polygalacturonase; Belongs to the glycosyl hydrolase 28 family. (568 aa)    
Predicted Functional Partners:
SHH88755.1
Lysophospholipase L1.
 
  0.982
SHH71671.1
Pectinesterase.
  
  0.973
SHH71642.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
     0.936
SHH71627.1
Unsaturated rhamnogalacturonyl hydrolase.
     0.932
SHH31846.1
Lysophospholipase L1.
 
 
  0.857
SHH57007.1
Por secretion system C-terminal sorting domain-containing protein.
 
  0.810
SHH88783.1
Unsaturated rhamnogalacturonyl hydrolase.
 
     0.798
SHH58502.1
Hypothetical protein.
 
  
  0.744
SHH31884.1
Lysophospholipase L1.
 
 
  0.647
SHH71717.1
Starch-binding associating with outer membrane.
 
 
   0.574
Your Current Organism:
Wenyingzhuangia marina
NCBI taxonomy Id: 1195760
Other names: CGMCC 1.12162, DSM 100572, JCM 18494, Lutibacter sp. D1, W. marina, Wenyingzhuangia marina Liu et al. 2014, strain D1
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