STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000308295_00675Unannotated protein. (301 aa)    
Predicted Functional Partners:
GCA_000308295_02128
Unannotated protein.
    
  0.647
GCA_000308295_01802
Unannotated protein.
   
 
  0.638
GCA_000308295_03720
Unannotated protein.
  
  
  0.638
GCA_000308295_02409
Unannotated protein.
   
 
  0.580
GCA_000308295_00674
Unannotated protein.
       0.567
GCA_000308295_00576
Unannotated protein.
   
 
  0.490
GCA_000308295_03540
Unannotated protein.
    
  0.486
GCA_000308295_03317
Unannotated protein.
    
  0.483
GCA_000308295_02827
Unannotated protein.
 
   
 0.416
Your Current Organism:
Afipia birgiae
NCBI taxonomy Id: 1197906
Other names: A. birgiae 34632, Afipia birgiae 34632, Afipia birgiae str. 34632, Afipia birgiae strain 34632, alpha proteobacterium 34632
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.