STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M900_2350Peptidase, S8/S53 family; Belongs to the peptidase S8 family. (563 aa)    
Predicted Functional Partners:
M900_1527
Nuclease, EndA/NucM family.
    
 0.622
M900_1687
Peptidase, S8/S53 family.
  
 
 
0.613
M900_1836
Chromosome condensation regulator, RCC1 repeat-containing protein.
   
  0.584
M900_1977
Chromosome condensation regulator, RCC1 repeat-containing protein.
 
 
  0.584
M900_2351
Hypothetical protein.
       0.511
M900_2353
PF14238 domain protein.
       0.490
EQC44204.1
Type III restriction enzyme, res subunit.
   
 0.466
M900_0856
Hypothetical protein; Identified by glimmer; putative.
    
  0.450
M900_0915
Hypothetical protein.
    
  0.450
M900_0916
Hypothetical protein.
    
  0.450
Your Current Organism:
Bacteriovorax sp. Seq25V
NCBI taxonomy Id: 1201288
Other names: B. sp. Seq25_V, Bacteriovorax sp. Seq25_V
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.