STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M900_2479Transcriptional regulator, LuxR family. (169 aa)    
Predicted Functional Partners:
M900_1623
Kinase domain protein.
   
 0.881
M900_1207
Sigma-70, region 4.
  
 0.865
EQC47998.1
Hypothetical protein; Identified by glimmer; putative.
    
 0.799
M900_1001
Response regulator receiver domain protein.
    
 0.797
M900_1719
PAS domain S-box protein.
     
 0.797
EQC47888.1
GHKL domain protein.
     
 0.797
EQC44356.1
GHKL domain protein.
     
 0.784
M900_1199
Metallo-beta-lactamase domain protein.
  
 
   0.664
M900_1145
NUDIX domain protein.
    
   0.621
M900_1150
Metallo-beta-lactamase domain protein.
    
   0.621
Your Current Organism:
Bacteriovorax sp. Seq25V
NCBI taxonomy Id: 1201288
Other names: B. sp. Seq25_V, Bacteriovorax sp. Seq25_V
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.